23 CF Swiss model result

SMTL id

2iho.1 

Title

Crystal structure of MOA, a lectin from the mushroom Marasmius oreades in complex with the trisaccharide Gal(1,3)Gal(1,4)GlcNAc

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

homo-dimer

Ligands 

4 x NAG- GAL- GAL: SUGAR (3-MER)

Links

RCSB   PDBsum   PDBe   CATH

Citation

Grahn, E. et al., Crystal structure of the marasmius oreades mushroom lectin in complex with a xenotransplantation epitope. J.Mol.Biol. (2007) 

Peptides

Lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Lectin

Toggle Identical (AB)

Seqres 2iho.1.(AB) Seqres 2iho.1.(AB) Seqres 2iho.1.(AB) Seqres 2iho.1.(AB) Seqres 2iho.1.(AB)

MSLRRGIYHIENAGVPSAIDLKDGSSSDGTPIVGWQFTPDTINWHQLWLAEPIPNVADTFTLCNL 65 -SLRRGIYHIENAGVPSAIDLKDGSSSDGTPIVGWQFTPDTINWHQLWLAEPIPNVADTFTLCNL 65 FSGTYMDLYNGSSEAGTAVNGWQGTAFTTNPHQLWTIKKSSDGTSYKIQNYGSKTFVDLVNGDSS 130 FSGTYMDLYNGSSEAGTAVNGWQGTAFTTNPHQLWTIKKSSDGTSYKIQNYGSKTFVDLVNGDSS 130 DGAKIAGWTGTWDEGNPHQKWYFNRMSVSSAEAQAAIARNPHIHGTYRGYILDGEYLVLPNATFT 195 DGAKIAGWTGTWDEGNPHQKWYFNRMSVSSAEAQAAIARNPHIHGTYRGYILDGEYLVLPNATFT 195 QIWKDSGLPGSKWREQIYDCDDFAIAMKAAVGKWGADSWKANGFAIFCGVMLGVNKAGDAAHAYN 260 QIWKDSGLPGSKWREQIYDCDDFAIAMKAAVGKWGADSWKANGFAIFCGVMLGVNKAGDAAHAYN 260 FTLTKDHADIVFFEPQNGGYLNDIGYDSYMAFY 293 FTLTKDHADIVFFEPQNGGYLNDIGYDSYMAFY 293

Related Entries With Identical Sequence

3ef2.1 | 3ef2.2 | 5d61.1 | 5d62.1 | 5d63.1

3aj6.1    (Other Biounits: 3aj6.2, 3aj6.3)

Title

HA1 (HA33) mutant F179I of botulinum type C progenitor toxin complexed with N-acetylgalactosamine, bound at site II

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

None

Links

RCSB   PDBsum   PDBe   CATH

Citation

Nakamura, T. et al., Molecular diversity of the two sugar-binding sites of the beta-trefoil lectin HA33/C (HA1) from Clostridium botulinum type C neurotoxin. Arch.Biochem.Biophys. (2011) 

Peptides

Main hemagglutinin component: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Main hemagglutinin component

Seqres 3aj6.1.A Seqres 3aj6.1.A Seqres 3aj6.1.A Seqres 3aj6.1.A Seqres 3aj6.1.A

MSQTNANDLRNNEVFFISPSNNTNKVLDKISQSEVKLWNKLSGANQKWRLIYDTNKQAYKIKVMDNTSLI 70 ---TNANDLRNNEVFFISPSNNTNKVLDKISQSEVKLWNKLSGANQKWRLIYDTNKQAYKIKVMDNTSLI 70 LTWNAPLSSVSVKTDTNGDNQYWYLLQNYISRNVIIRNYMNPNLVLQYNIDDTLMVSTQTSSSNQFFKFS 140 LTWNAPLSSVSVKTDTNGDNQYWYLLQNYISRNVIIRNYMNPNLVLQYNIDDTLMVSTQTSSSNQFFKFS 140 NCIYEALNNRNCKLQTQLNSDRFLSKNLNSQIIVLWQWIDSSRQKWIIEYNETKSAYTLKCQENNRYLTW 210 NCIYEALNNRNCKLQTQLNSDRFLSKNLNSQIIVLWQWIDSSRQKWIIEYNETKSAYTLKCQENNRYLTW 210 IQNSNNYVETYQSTDSLIQYWNINYLDNDASKYILYNLQDTNRVLDVYNSQIANGTHVIVDSYHGNTNQQ 280 IQNSNNYVETYQSTDSLIQYWNINYLDNDASKYILYNLQDTNRVLDVYNSQIANGTHVIVDSYHGNTNQQ 280 WIINLI 286 WIINLI 286

Related Entries With Identical Sequence

3aj6.2 | 3aj6.3

SMTL id

3phz.1 

Title

Crystal Structure Analysis of Polyporus squamosus lectin bound to human-type influenza-binding epitope Neu5Aca2-6Galb1-4GlcNAc

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands 

1 x NAG- GAL: 2,6-Sialyl-lactosamineNon-covalent 

1 x SIA: SUGAR (O-SIALIC ACID)Non-covalent 

1 x NAG- GAL- SIA: SUGAR (3-MER)Ligand Not Annotated 

Links

RCSB   PDBsum   PDBe   CATH

Citation

Kadirvelraj, R. et al., Structure and binding analysis of Polyporus squamosus lectin in complex with the Neu5Ac{alpha}2-6Gal{beta}1-4GlcNAc human-type influenza receptor. Glycobiology (2011) 

Peptides

Ricin B-related lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ricin B-related lectin

Toggle Identical (AB)

Seqres 3phz.1.(AB) Seqres 3phz.1.(AB) Seqres 3phz.1.(AB) Seqres 3phz.1.(AB) Seqres 3phz.1.(AB)

MSFQGHGIYYIASAYVANTRLALSEDSSANKSPDVIISSDAVDPLNNLWLIEPVGEADTYTVRNA 65 -SFQGHGIYYIASAYVANTRLALSE----NKSPDVIISSDAVDPLNNLWLIEPVGEADTYTVRNA 65 FAGSYMDLAGHAATDGTAIIGYRPTGGDNQKWIISQINDVWKIKSKETGTFVTLLNGDGGGTGTV 130 FAGSYMDLAGHAATDGTAIIGYRPTGGDNQKWIISQINDVWKIKSKETGTFVTLLNG---GTGTV 130 VGWQNITNNTSQNWTFQKLSQTGANVHATLLACPALRQDFKSYLSDGLYLVLTRDQISSIWQASG 195 VGWQNITNNTSQNWTFQKLSQTGANVHATLLACPALRQDFKSYLSDGLYLVLTRDQISSIWQASG 195 LGSTPWRSEIFDCDDFATVFKGAVAKWGNENFKANGFALLCGLMFGSKSSGAHAYNWFVERGNFS 260 LGSTPWRSEIFDCDDFATVFKGAVAKWGNENFKANGFALLCGLMFGSKSSGAHAYNWFVERGNFS 260 TVTFFEPQNGTYSANAWDYKAYFGLF 286 TVTFFEPQNGTYSANAWDYKAYFGLF

SMTL id

1jlx.1 

Title

AGGLUTININ IN COMPLEX WITH T-DISACCHARIDE

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands 

2 x GAL- A2G: SUGAR (2-MER)Non-covalent 

2 x FOR: FORMYL GROUPCovalent 

2 x MBN: TOLUENENon-covalent 

Links

RCSB   PDBsum   PDBe   CATH

Citation

Transue, T.R. et al., Structure of benzyl T-antigen disaccharide bound to Amaranthus caudatus agglutinin. Nat.Struct.Biol. (1997) 

Peptides

AGGLUTININ: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AGGLUTININ

Toggle Identical (AB)

Seqres 1jlx.1.(AB) Seqres 1jlx.1.(AB) Seqres 1jlx.1.(AB) Seqres 1jlx.1.(AB) Seqres 1jlx.1.(AB)

AGLPVIMCLKSNNHQKYLRYQSDNIQQYGLLQFSADKILDPLAQFEVEPSKTYDGLVHIKSRYTN 65 AGLPVIMCLKSNNHQKYLRYQSDNIQQYGLLQFSADKILDPLAQFEVEPSKTYDGLVHIKSRYTN 65 KYLVRWSPNHYWITASANEPDENKSNWACTLFKPLYVEEGNMKKVRLLHVQLGHYTQNYTVGGSF 130 KYLVRWSPNHYWITASANEPDENKSNWACTLFKPLYVEEGNMKKVRLLHVQLGHYTQNYTVGGSF 130 VSYLFAESSQIDTGSKDVFHVIDWKSIFQFPKGYVTFKGNNGKYLGVITINQLPCLQFGYDNLND 195 VSYLFAESSQIDTGSKDVFHVIDWKSIFQFPKGYVTFKGNNGKYLGVITINQLPCLQFGYDNLND 195 PKVAHQMFVTSNGTICIKSNYMNKFWRLSTDDWILVDGNDPRETNEAAALFRSDVHDFNVISLLN 260 PKVAHQMFVTSNGTICIKSNYMNKFWRLSTDDWILVDGNDPRETNEAAALFRSDVHDFNVISLLN 260 MQKTWFIKRFTSGKPGFINCMNAATQNVDETAILEIIELGQNN 303 MQKTWFIKRFTSGKPGFINCMNAATQNVDETAILEIIEL---- 299